Wow! I could've written this in the sense that my son has also had relationship breakdown, is staying with us for Xmas. He is also coming to stay with us for a short while, as circumstances are he is also looking for a new home and job. He sounds very similar to your son in that he's polite, quiet but his room is a bit untidy.
The massive difference is, that whilst we all know it's going to be an adjustment for all of us, my husband has been nothing but supportive about the situation.
We like our quiet life and routine, but as we see it when your kids need help, you do what you can to support them.
From what you say, to me it comes across that your partner could be jealous of your relationship with your kids.
Have you discussed how they make your kids feel?
I really hope you find some resolution.